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⊟Summary[edit | edit source]
- pan ID?: SAUPAN001163000
- symbol?: lytM
- synonym:
- description?: peptidoglycan hydrolase
- peptidoglycan hydrolase
- glycyl-glycine endopeptidase LytM
- glycine-glycine endopeptidase LytM
- peptidoglycan hydrolase, putative
- Glycyl-glycine endopeptidase lytM precursor
- M23 family lysostaphin
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1434254..1435234
- synteny block?: BlockID0006830
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0276 (lytM)
08BA02176:
C248_0266 (lytM)
11819-97:
MS7_0267 (lytM)
6850:
RSAU_000222 (lytM)
71193:
ST398NM01_0291
ECT-R 2:
ECTR2_237
ED133:
SAOV_0217 (lytM)
ED98:
SAAV_0244 (lytM)
HO 5096 0412:
SAEMRSA15_02350 (lytM)
JH1:
SaurJH1_0267
JH9:
SaurJH9_0260
JKD6008:
SAA6008_00250
JKD6159:
SAA6159_00254
LGA251:
SARLGA251_02400 (lytM)
M013:
M013TW_0257
MRSA252:
SAR0273 (lytM)
MSHR1132:
SAMSHR1132_02420
MSSA476:
SAS0252
Mu3:
SAHV_0274 (lytM)
Mu50:
SAV0276 (lytM)
MW2:
MW0252 (lytM)
RF122:
SAB0215 (lytM)
ST398:
SAPIG0291
T0131:
SAT0131_00271
TCH60:
HMPREF0772_10224 (lytM)
TW20:
SATW20_02780 (lytM)
USA300_TCH1516:
USA300HOU_0289 (lytM)
VC40:
SAVC_01125
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MEDVLYMKKLTAAAIATMGFATFTMAHQADAAETTNTQQAHTQMSTQSQDVSYGTYYTID
N315 ------MKKLTAAAIATMGFATFTMAHQADAAETTNTQQAHTLMSTQSQDVSYGTYYTID
NCTC8325 ------MKKLTAAAIATMGFATFTMAHQADAAETTNTQQAHTQMSTQSQDVSYGTYYTID
Newman ------------------------------------------------------------
USA300_FPR3757 ------MKKLTAAAIATMGFATFTMAHQADAAETTNTQQAHTQMSTQSQDVSYGTYYTID
COL SNGDYHHTPDGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATA
N315 SNGDYHHTPDGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATA
NCTC8325 SNGDYHHTPDGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATA
Newman ----------------MFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATA
USA300_FPR3757 SNGDYHHTPDGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATA
********************************************
COL GDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNYPNGTSNQNG
N315 GDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNYPNGTSNQNG
NCTC8325 GDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNYPNGTSNQNG
Newman GDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNYPNGTSNQNG
USA300_FPR3757 GDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNYPNGTSNQNG
************************************************************
COL GSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQA
N315 GSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQA
NCTC8325 GSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQA
Newman GSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQA
USA300_FPR3757 GSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQA
************************************************************
COL GWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHF
N315 GWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHF
NCTC8325 GWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHF
Newman GWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHF
USA300_FPR3757 GWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHF
************************************************************
COL QRMSGGIGNQYAVDPTSYLQSR
N315 QRMSGGIGNQYAVDPTSYLQSR
NCTC8325 QRMSGGIGNQYAVDPTSYLQSR
Newman QRMSGGIGNQYAVDPTSYLQSR
USA300_FPR3757 QRMSGGIGNQYAVDPTSYLQSR
**********************