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Summary[edit source | edit]

  • pan ID?: SAUPAN001163000
  • symbol?: lytM
  • description?: peptidoglycan hydrolase

      descriptions from strain specific annotations:

    • peptidoglycan hydrolase
    • glycyl-glycine endopeptidase LytM
    • Glycyl-glycine endopeptidase lytM precursor
    • M23 family lysostaphin
  • strand?: +
  • coordinates?: 1434254..1435234
  • synteny block?: BlockID0006830
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0263 (lytM)
    N315:
    SA0265 (lytM)
    NCTC8325:
    Newman:
    NWMN_0210 (lytM)
    USA300_FPR3757:
    04-02981:
    SA2981_0276 (lytM)
    08BA02176:
    C248_0266 (lytM)
    11819-97:
    MS7_0267 (lytM)
    71193:
    ST398NM01_0291
    ECT-R 2:
    ECTR2_237
    ED133:
    SAOV_0217 (lytM)
    ED98:
    SAAV_0244 (lytM)
    HO 5096 0412:
    SAEMRSA15_02350 (lytM)
    JH1:
    SaurJH1_0267
    JH9:
    SaurJH9_0260
    JKD6008:
    SAA6008_00250
    JKD6159:
    SAA6159_00254
    LGA251:
    SARLGA251_02400 (lytM)
    M013:
    M013TW_0257
    MRSA252:
    SAR0273 (lytM)
    MSHR1132:
    SAMSHR1132_02420
    MSSA476:
    SAS0252
    Mu3:
    SAHV_0274 (lytM)
    Mu50:
    SAV0276 (lytM)
    MW2:
    MW0252 (lytM)
    RF122:
    SAB0215 (lytM)
    ST398:
    SAPIG0291
    T0131:
    SAT0131_00271
    TCH60:
    HMPREF0772_10224 (lytM)
    TW20:
    SATW20_02780 (lytM)
    USA300_TCH1516:
    USA300HOU_0289 (lytM)
    VC40:
    SAVC_01125

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MEDVLYMKKLTAAAIATMGFATFTMAHQADAAETTNTQQAHTQMSTQSQDVSYGTYYTID
    N315            ------MKKLTAAAIATMGFATFTMAHQADAAETTNTQQAHTLMSTQSQDVSYGTYYTID
    NCTC8325        ------MKKLTAAAIATMGFATFTMAHQADAAETTNTQQAHTQMSTQSQDVSYGTYYTID
    Newman          ------------------------------------------------------------
    USA300_FPR3757  ------MKKLTAAAIATMGFATFTMAHQADAAETTNTQQAHTQMSTQSQDVSYGTYYTID
                                                                                

    COL             SNGDYHHTPDGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATA
    N315            SNGDYHHTPDGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATA
    NCTC8325        SNGDYHHTPDGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATA
    Newman          ----------------MFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATA
    USA300_FPR3757  SNGDYHHTPDGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATA
                                    ********************************************

    COL             GDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNYPNGTSNQNG
    N315            GDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNYPNGTSNQNG
    NCTC8325        GDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNYPNGTSNQNG
    Newman          GDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNYPNGTSNQNG
    USA300_FPR3757  GDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNYPNGTSNQNG
                    ************************************************************

    COL             GSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQA
    N315            GSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQA
    NCTC8325        GSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQA
    Newman          GSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQA
    USA300_FPR3757  GSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQA
                    ************************************************************

    COL             GWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHF
    N315            GWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHF
    NCTC8325        GWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHF
    Newman          GWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHF
    USA300_FPR3757  GWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHF
                    ************************************************************

    COL             QRMSGGIGNQYAVDPTSYLQSR
    N315            QRMSGGIGNQYAVDPTSYLQSR
    NCTC8325        QRMSGGIGNQYAVDPTSYLQSR
    Newman          QRMSGGIGNQYAVDPTSYLQSR
    USA300_FPR3757  QRMSGGIGNQYAVDPTSYLQSR
                    **********************